[INFO] fetching crate librna-sys 0.3.0...
[INFO] checking librna-sys-0.3.0 against master#82310651b93a594a3fd69015e1562186a080d94c for pr-145770
[INFO] extracting crate librna-sys 0.3.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate librna-sys 0.3.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate librna-sys 0.3.0
[INFO] tweaked toml for crates.io crate librna-sys 0.3.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate librna-sys 0.3.0 on toolchain 82310651b93a594a3fd69015e1562186a080d94c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate librna-sys 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 070f6cf1318281eb43f7515d1e1fd14babf14b3f3cf10c6325610c90b469d315
[INFO] running `Command { std: "docker" "start" "-a" "070f6cf1318281eb43f7515d1e1fd14babf14b3f3cf10c6325610c90b469d315", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "070f6cf1318281eb43f7515d1e1fd14babf14b3f3cf10c6325610c90b469d315", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "070f6cf1318281eb43f7515d1e1fd14babf14b3f3cf10c6325610c90b469d315", kill_on_drop: false }`
[INFO] [stdout] 070f6cf1318281eb43f7515d1e1fd14babf14b3f3cf10c6325610c90b469d315
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 68c46ef6e82203e4923b74e7704846d80dd8912f7fe99c625b8353bdef74c8f6
[INFO] running `Command { std: "docker" "start" "-a" "68c46ef6e82203e4923b74e7704846d80dd8912f7fe99c625b8353bdef74c8f6", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling prettyplease v0.2.22
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling bindgen v0.70.1
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]    Compiling clang-sys v1.3.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling pyo3-build-config v0.22.2
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]    Compiling regex v1.5.5
[INFO] [stderr]    Compiling pyo3-macros-backend v0.22.2
[INFO] [stderr]    Compiling pyo3-ffi v0.22.2
[INFO] [stderr]    Compiling pyo3 v0.22.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling pyo3-macros v0.22.2
[INFO] [stderr]    Compiling librna-sys v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: librna-sys@0.3.0: pkg_config failed (
[INFO] [stderr] warning: librna-sys@0.3.0: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr] warning: librna-sys@0.3.0: libRNA.a not found!
[INFO] [stderr] warning: librna-sys@0.3.0: Fallback mode for locally building libRNA.a is not yet implemented.
[INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.0 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-2d2b790b0cd703f5/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=src/wrapper.h
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_LIB_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:warning=pkg_config failed (
[INFO] [stderr]   pkg-config exited with status code 1
[INFO] [stderr]   > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0
[INFO] [stderr] 
[INFO] [stderr]   The system library `RNAlib2` required by crate `librna-sys` was not found.
[INFO] [stderr]   The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory.
[INFO] [stderr]   The PKG_CONFIG_PATH environment variable is not set.
[INFO] [stderr] 
[INFO] [stderr]   HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`.
[INFO] [stderr]   ).
[INFO] [stderr]   cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr]   cargo:warning=libRNA.a not found!
[INFO] [stderr]   cargo:warning=Fallback mode for locally building libRNA.a is not yet implemented.
[INFO] [stderr]   cargo:rustc-link-lib=static=RNA
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   cargo:rustc-link-lib=gsl
[INFO] [stderr]   cargo:rustc-link-lib=mpfr
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=gmp
[INFO] [stderr]   cargo:include=/usr/include
[INFO] [stderr]   cargo:include=/usr/include/ViennaRNA
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at src/build.rs:95:10:
[INFO] [stderr]   Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n")
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x57d39ada4672 - std::backtrace_rs::backtrace::libunwind::trace::h76ea176a64426f0f
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x57d39ada4672 - std::backtrace_rs::backtrace::trace_unsynchronized::h0830675862e8e766
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x57d39ada4672 - std::sys::backtrace::_print_fmt::hba1ccef63faaa048
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x57d39ada4672 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hca516e2c7056a217
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x57d39adcaf23 - core::fmt::rt::Argument::fmt::ha510764ac9e77b66
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x57d39adcaf23 - core::fmt::write::h97a802838d45fe7e
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x57d39ada12d3 - std::io::default_write_fmt::hb63ad55b2aa53928
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x57d39ada12d3 - std::io::Write::write_fmt::h6b2df461464d9a05
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x57d39ada44c2 - std::sys::backtrace::BacktraceLock::print::h81c102a9ac0a1bc7
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x57d39ada5a83 - std::panicking::default_hook::{{closure}}::h9934714bf98b056d
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x57d39ada5865 - std::panicking::default_hook::hb31a4fc725ffcf0a
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x57d39ada6495 - std::panicking::rust_panic_with_hook::h8df5393cb811c708
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x57d39ada622a - std::panicking::begin_panic_handler::{{closure}}::h73dc0a59c2d3b9c7
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:706:13
[INFO] [stderr]     13:     0x57d39ada4b79 - std::sys::backtrace::__rust_end_short_backtrace::h9eb84a109f69f8ca
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x57d39ada5ebd - __rustc[98c2592f34d7b78b]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x57d39adc92b0 - core::panicking::panic_fmt::hb0df011123225e8b
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x57d39adc9716 - core::result::unwrap_failed::h15fa24b59c94aa17
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/result.rs:1761:5
[INFO] [stderr]     17:     0x57d39a896714 - core::result::Result<T,E>::expect::h1252632ef67b380f
[INFO] [stderr]     18:     0x57d39a899225 - build_script_build::main::h206bbe43b8f3f143
[INFO] [stderr]     19:     0x57d39a895653 - core::ops::function::FnOnce::call_once::hdbf7e0eb2cacb8ff
[INFO] [stderr]     20:     0x57d39a895136 - std::sys::backtrace::__rust_begin_short_backtrace::hc367b6e66306a533
[INFO] [stderr]     21:     0x57d39a895119 - std::rt::lang_start::{{closure}}::h74c1f7791d451067
[INFO] [stderr]     22:     0x57d39ad9c310 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h0bcac900efc89129
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/ops/function.rs:290:21
[INFO] [stderr]     23:     0x57d39ad9c310 - std::panicking::catch_unwind::do_call::hfadc8e58bd88a07a
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     24:     0x57d39ad9c310 - std::panicking::catch_unwind::h44c20dc1edb63a1e
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     25:     0x57d39ad9c310 - std::panic::catch_unwind::hed574ee6107b8e15
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x57d39ad9c310 - std::rt::lang_start_internal::{{closure}}::h7f49669407df0483
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x57d39ad9c310 - std::panicking::catch_unwind::do_call::hdc3b107dc7611175
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     28:     0x57d39ad9c310 - std::panicking::catch_unwind::h50fbac1cdf73dd69
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     29:     0x57d39ad9c310 - std::panic::catch_unwind::h061b64ee85b76832
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x57d39ad9c310 - std::rt::lang_start_internal::h935ec80c2dc417b9
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x57d39a895101 - std::rt::lang_start::hd13934783cc75da6
[INFO] [stderr]     32:     0x57d39a899c95 - main
[INFO] [stderr]     33:     0x76e8a4ed31ca - <unknown>
[INFO] [stderr]     34:     0x76e8a4ed328b - __libc_start_main
[INFO] [stderr]     35:     0x57d39a8941a5 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "68c46ef6e82203e4923b74e7704846d80dd8912f7fe99c625b8353bdef74c8f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68c46ef6e82203e4923b74e7704846d80dd8912f7fe99c625b8353bdef74c8f6", kill_on_drop: false }`
[INFO] [stdout] 68c46ef6e82203e4923b74e7704846d80dd8912f7fe99c625b8353bdef74c8f6
